Oral presentations
Roberta Coletti, Bruno M. Costa, Marta B. Lopes. Advancing glioma research through multi-omics network discovery and analysis. 1st Net4Brain Annual Meeting, 4-6 September 2024, Ljubljana, Slovenia
João Brandão, Marta B. Lopes, Eunice Carrasquinha (2024). Refining gene selection and outlier detection in glioblastoma based on a consensus approach for regularized survival models. The 11th International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO), 15-17 July 2024, Gran Canaria, Spain
Nina Kastendiek, Roberta Coletti, Marta B. Lopes. Understanding omics links behind glioma heterogeneity: a network and clustering approach. The 18th conference of the International Federation of Classification Societies (IFCS), 15-29 July 2024, San José, Costa Rica
Roberta Coletti, Marta B. Lopes. Unveiling glioma heterogeneity by gene-protein biomarker detection via network discovery and dimensionality reduction. The 9th International Caparica Conference on Analytical Proteomics (ICAP), 23-27 June 2024, Caparica, Portugal
Joana M. Ferreira, Céline S. Gonçalves, Eduarda P. Martins, Bruno M. Costa. Deciphering WNT6-driven mechanisms of aggressiveness and resistance to chemotherapy in human glioblastoma. The 11th edition of signal transduction (SINAL 2024), 24-25 May 2024, Coimbra, Portugal (Best Poster Communication Award)
Joana M. Ferreira, Céline S. Gonçalves, Eduarda P. Martins, Bruno M. Costa. Deciphering WNT6-driven mechanisms of aggressiveness and resistance to chemotherapy in human glioblastoma. The 6th ASPIC International Congress, 29-30 April 2024, Algarve, Portugal
João F. Carrilho, Roberta Coletti, Marta B. Lopes. Selection of network biomarkers in gliomas via robust sparse network discovery and classification. Lisbon Young Mathematicians Conference, 12-13 April 2024, Lisbon, Portugal
Marta B. Lopes, Roberta Coletti, João Carrilho. Sparsity-inducing network inference and classification for the identification of gene expression signatures in gliomas. The 15th Conference on Dynamical Systems Applied to Biology and Natural Sciences (DSABNS), February 6-9, 2024, Caparica, Portugal
Eduarda P. Martins, Céline S. Gonçalves, Joana Peixoto, Joana M. Ferreira, Adhemar Longatto-Filho, Pedro M. Costa, Nuno S. Osório, Sara Granja, Bruno M. Costa. Novel roles of Cadherin-3 in the metabolic and molecular reprogramming of glioblastoma. XIV Congresso Nacional Associação Portuguesa Neuro-Oncologia, 2 February 2024, Lisbon, Portugal (Best Oral Communication Award)
Joana M. Ferreira, Céline S. Gonçalves, Eduarda P. Martins, Bruno M. Costa. Deciphering WNT6-driven mechanisms of aggressiveness and resistance to chemotherapy in human glioblastoma. XIV Congresso Nacional Associação Portuguesa Neuro-Oncologia, 2 February 2024, Lisbon, Portugal
Marta B. Lopes, Roberta Coletti, João Carrilho. Identifying brain tumor gene signatures through multi-omics network inference and classification. IMS International Conference on Statistics and Data Science (ICSDS) December 18-21, 2023, Lisbon, Portugal
João Brandão, Marta B. Lopes, Eunice Carrasquinha. Dimensionality reduction in survival models based on gene expression data: an application to brain cancer. XXVI Congress of the Portuguese Statistical Society, 11-14 October 2023, Guimarães
Francisca G. Vieira, Regina Bispo, Marta B. Lopes. Classification and survival analysis of multi-omics data for the identification of novel diagnostic and prognostic biomarkers in glioma. XXVI Congress of the Portuguese Statistical Society, 11-14 October 2023, Guimarães, Portugal
Roberta Coletti, Marta B. Lopes (2023). Multi-omics data integration and network inference for biomarker discovery in glioma. The 22nd EPIA Conference on Artificial Intelligence,5-8 September 2023, Faial, Azores, Portugal
Roberta Coletti, Sofia Martins, Marta B. Lopes. Network inference and robust clustering on high-dimensional data to investigate molecular heterogeneity in glioma. The 25th International Conference on Computational Statistics (COMPSTAT), 22-25 August 2023, London, UK
Natasa Krejić, Evelin Krulikovski, Marcos Raydan. An augmented Lagrangian approach for cardinality constrained minimization applied to variable selection problems. Optimization 2023, 24-26 July 2023, Aveiro, Portugal
Natasa Krejić, Evelin Krulikovski, Marcos Raydan. Alternating projection approach for a continuous formulation of convex and cardinality constrained optimization (Plenary talk). Numerical Analysis and Scientific Computation with Applications (NASCA23), 2-7 July 2023, Athens, Greece
Roberta Coletti, Mónica Leiria de Mendonça, Susana Vinga, Marta B. Lopes. Evaluating the impact of inclusion of molecular information in glioma classification on network-based biomarker discovery. Data Science, Statistics and Visualisation (DSSV2023) and European Conference on Data Analysis (ECDA), 5-7 July 2023, Antwerp, Belgium
Marta B. Lopes, Susana Vinga. Identification of driver genes in glioblastoma via regularized classification. The 17th conference of the International Federation of Classification Societies (IFCS), 19-23 July 2022, Porto, Portugal
Jorge Orestes Cerdeira, Maria João Martins, Marcos Raydan. The Max-Out Min-In Problem: A Tool for Data Analysis in Biomathematics. Encontro Nacional da Sociedade Portuguesa de Matemática (ENSPM2022), 18-20 July, 2022, Tomar, Portugal
Jorge Orestes Cerdeira, Maria João Martins, Marcos Raydan. The Max-Out Min-In Problem: A Tool for Data Analysis in
Biomathematics (Plenary talk). The 3rd Portuguese Meeting in Biomathematics, 13-14 July, 2022, Caparica, Portugal
Eduarda P. Martins, Céline S. Gonçalves, Marta Pojo, Rita Carvalho, Ana Sofia Ribeiro, Vera Miranda-Gonçalves, Ricardo Taipa, Fernando Pardal, Afonso A. Pinto, Carlos Custódia, Cláudia C. Faria, Fátima Baltazar, Nuno Sousa, Joana Paredes, Costa B.M. (2022). Cadherin-3 is a novel oncogenic biomarker with prognostic value in glioblastoma. The 5th ASPIC International Congress, 30 June – 1 July 2022, Porto, Portugal
João Santinha, Celso Matos, Nikolaos Papanikolaou, Mário A. T. Figueiredo. Improving generalizability to out-of-distribution data in radiogenomic models to predict IDH mutation status in glioma patients. IEEE International Symposium on Medical Measurements and Applications (MeMeA), 22-24 June 2022, Messina, Italy
Marta B. Lopes. Biomarker discovery in cancer transcriptomic data using network-based regularization. ML4Microbiome Workshop, Faculty of Natural Sciences, University of Tirana, 24 May 2022, Tirana, Albania
Eduarda P. Martins, Céline S. Gonçalves, Marta Pojo, Rita Carvalho, Ana S. Ribeiro,
Vera Miranda-Gonçalves, Ricardo Taipa, Fernando Pardal, Afonso A. Pinto, Carlos
Custódia, Cláudia C. Faria, Fátima Baltazar, Nuno Sousa, Joana Paredes, Bruno M.
Costa. CDH3/P-cadherin is a novel oncogenic biomarker with prognostic value in
glioblastoma. II ASPIC-ASEICA International Meeting, 14-15 October 2021 (online event)
Eduarda P. Martins, Céline S. Gonçalves, Marta Pojo, Rita Carvalho, Ana S. Ribeiro,
Vera Miranda-Gonçalves, Ricardo Taipa, Fernando Pardal, Afonso A. Pinto, Carlos
Custódia, Cláudia C. Faria, Fátima Baltazar, Nuno Sousa, Joana Paredes, Bruno M.
Costa. CDH3/P-cadherin is a novel oncogenic biomarker with prognostic value in
glioblastoma. XII Congresso Nacional Associação Portuguesa Neuro-Oncologia, 14-15
October 2021 (online event)
Poster presentations
Roberta Coletti, João F. Carrilho, Céline S. Gonçalves, Bruno M. Costa, Marta B. Lopes. MINGLE: A new tool for advancing multi-omics network integration and visualization. European Conference of Mathematical and Theoretical Biology (ECMTB), 22-25 July 2024, Toledo, Spain
Eduarda P. Martins, Céline S. Gonçalves, Joana Peixoto, Joana M. Ferreira, Adhemar Longatto-Filho, Pedro M. Costa, Nuno S. Osório, Sara Granja, Bruno M. Costa. A transcriptomic profiling reveals novel roles of Cadherin-3 in metabolic programming of glioblastoma. III ASPIC-ASEICA International Meeting, 26-27 October 2023, Porto, Portugal (Best Poster Award)
João F. Carrilho, Roberta Coletti, Marta B. Lopes. Unveiling gene signatures in glioma: A comprehensive analysis using regularized logistic regression, dimensionality reduction, and outlier detection. XXVI Congress of the Portuguese Statistical Society, 11-14 October 2023, Guimarães (2nd Best Poster Award)
Roberta Coletti, Sofia Martins, Marta B. Lopes. Network inference and clustering: mathematical tools to discover glioma biomarkers from gene expression patient data. Women in Mathematics Meeting in Portugal (WM23), 24-26 July 2023, Coimbra, Portugal
João F. Carrilho, Roberta Coletti and Marta B. Lopes. Disclosing gene signatures in gliomas via classification and dimensionality reduction methods. 5th Statistics on Health Decision Making, 1-2 June 2023, Aveiro, Portugal (Honorable Mention)
Francisca G. Vieira, Regina Bispo, Marta B. Lopes. Integration of multi-omics data for the classification of glioma subtypes and identification of novel biomarkers. XII Edition of the Bioinformatics Open Days, 16-18 March 2023, Braga, Portugal
Eduarda P. Martins, Céline S. Gonçalves, Joana Peixoto, Joana M. Ferreira, Adhemar Longatto-Filho, Jorge Lima, Pedro M. Costa, Sara Granja, Bruno M. Costa. Unveiling the impact of the oncogenic molecule Cadherin-3 in the metabolism of human glioblastoma. XIII Congresso Nacional Associação Portuguesa Neuro-Oncologia, 3 February 2023, Valadares, Portugal
João F. Carrilho and Marta B. Lopes. Identification of transcriptomic markers of intertumoral heterogeneity in gliomas via sparse logistic regression with the elastic net penalty. 3rd Portuguese Meeting in Biomathematics, 13-14 July 2022, Caparica, Portugal
Roberta Coletti, Sofia Martins, Marta B. Lopes. Disclosing sparse transcriptomics networks in gliomas using the graphical lasso. The 3rd Portuguese Meeting in Biomathematics, 2022, 13-14 July 2022, Caparica, Portugal
Margarida Machado-Sousa, Céline S. Gonçalves, Andreia Neves-Carvalho, Eduarda P. Martins, Liliana Costa, Sara Duarte-Silva, Patrícia Maciel, Bruno M. Costa. Role of the ubiquitin hydrolase ATXN3 in glioblastoma: a new tumor suppressor gene? 5th ASPIC International Congress, 30 June-1 July 2022, Porto, Portugal
Eduarda P. Martins, Céline S. Gonçalves, Marta Pojo, Rita Carvalho, Ana S. Ribeiro, Vera Miranda-Gonçalves, Ricardo Taipa, Fernando Pardal, Afonso A. Pinto, Carlos Custódia, Cláudia C. Faria, Fátima Baltazar, Nuno Sousa, Joana Paredes, Bruno M. Costa. Cadherin-3 is a novel oncogenic biomarker with prognostic value in glioblastoma. 11th Brain Tumor Meeting, 19-20 May 2022, Berlin, Germany